Provider ID=158

The content on this page is automatically generated by examining the metadata document and other information obtained from the provider endpoint. This page is generated approximately once per day, so edits to the provider metadata should show up within 24 hours or so.

Detail about DiGIR data provider located at
http://166.122.60.46:8080/digir/DiGIR.php
ID
Internal identifier for provider
Name
The provider name
Code
The provider code as reported in the metadata
Related Information
URL for additional information about the service
Version
The software version code
Implementation
Provider implementation code
Namespace
The namespace of the metadata document
Service Name
Access point
The provider access point as reported in the metadata.
Last Five Status
Status codes of provider when last checked the last five times.
Response Times
Last five metadata response times in seconds. Note that response times at 180 seconds or over indicate a network socket timeout.
Encoding
The character encoding detected by the Big Dig. This is accurate in most cases, but sometimes gets a bit confused. In anycase, the output should be UTF-8 encoding.
Item Value
ID 158
Name 166.122.60.46
Code OBIS-USA
Related Information http://pbin.usgs.gov/
Version $Revision: 1.14 $
Implementation $Revision: 1.14 $
Name space http://digir.net/schema/protocol/2003/1.0
Service name OBIS-USA Provider
Access Point http://166.122.60.46:8080/digir/DiGIR.php
Last Five Status (-1, -1, -1, -1, -1)
Last Five Response (sec) (180.0, 180.0, 180.0, 180.0, 180.0)
Encoding Detected None

Registry Info

This provider was found to be registered in the following registries.

ID
Internal identifier for registry
Name
The name of the registry
More Info
URL for additional information about the registry
Last Checked
When the registry was last examined
ID Name More Info Last Checked
7 OBIS http://www.gbif.org/ 2008–02-17 08:15:34+0000

Resources

The following resources were found to be hosted by this data provider.

GulfOfMaineBIS

Item Value
Name Gulf of Maine Bottom Trawl Survey Data (NEFSC,NMFS,NOAA)
Code GulfOfMaineBIS
Reported record count 5311
Reported last update 2007–04-14 21:22:56–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

BernicePBishopMuseum

Item Value
Name Bishop Museum Data (OBIS distribution)
Code BernicePBishopMuseum
Reported record count 7881
Reported last update 2007–09-24 21:25:45–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

ArcticOceanDiversity

Item Value
Name Arctic Ocean Diversity
Code ArcticOceanDiversity
Reported record count 177
Reported last update 2007–09-24 21:25:46–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

CensusOfMarineZooplankton

Item Value
Name Census of Marine Zooplankton
Code CensusOfMarineZooplankton
Reported record count 1467
Reported last update 2007–09-24 21:25:46–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

CensusOfCoralReef

Item Value
Name Census Of Coral Reef Ecosystems
Code CensusOfCoralReef
Reported record count 2572
Reported last update 2007–04-14 21:22:57–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

InternationalCensusOfMarineMicrobes

Item Value
Name International Census Of Marine Microbes
Code InternationalCensusOfMarineMicrobes
Reported record count 2315
Reported last update 2007–09-24 21:25:46–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

SmithsonianEnviromentalResearchCenter

Item Value
Name Smithsonian Environmental Research Center
Code SmithsonianEnviromentalResearchCenter
Reported record count 4808
Reported last update 2007–09-24 21:25:47–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

TheSoutheasternRegionalTaxonomicCenter

Item Value
Name The Southeast Regional Taxonomic Center
Code TheSoutheasternRegionalTaxonomicCenter
Reported record count 2095
Reported last update 2007–09-24 21:25:47–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

ZooplanktonGenomic

Item Value
Name ZooGene A DNA Sequence Database for Calanoid Copepods and Euphausiids
Code ZooplanktonGenomic
Reported record count 1
Reported last update 2007–09-24 21:25:48–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

BermudaAtlanticTZooplanktonCensus

Item Value
Name Bermuda Atlantic Time-series Study Zooplankton Census
Code BermudaAtlanticTZooplanktonCensus
Reported record count 635
Reported last update 2007–09-24 21:25:47–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

GulfOfMexicoAmphipod

Item Value
Name The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology – DgoMB: Amphipods
Code GulfOfMexicoAmphipod
Reported record count 49
Reported last update 2007–09-24 21:25:48–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

GulfOfMexicoFish

Item Value
Name The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology – DgoMB: Fishs
Code GulfOfMexicoFish
Reported record count 342
Reported last update 2007–09-24 21:25:49–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

GulfOfMexicoInvert

Item Value
Name The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology – DgoMB: Inverts
Code GulfOfMexicoInvert
Reported record count 32
Reported last update 2007–09-24 21:25:49–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

GulfOfMexicoIsopod

Item Value
Name The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology – DgoMB: Isopods
Code GulfOfMexicoIsopod
Reported record count 868
Reported last update 2007–09-24 21:25:49–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

GulfOfMexicoMacro

Item Value
Name The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology – DgoMB: Macros
Code GulfOfMexicoMacro
Reported record count 10336
Reported last update 2007–09-24 21:25:50–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

GulfOfMexicoMeio

Item Value
Name The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology – DgoMB: Meios
Code GulfOfMexicoMeio
Reported record count 559
Reported last update 2007–09-24 21:25:50–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

GulfOfMexicoPoly

Item Value
Name The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology – DgoMB: Polys
Code GulfOfMexicoPoly
Reported record count 78
Reported last update 2007–09-24 21:25:51–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

GulfOfMexicoTrawl

Item Value
Name The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology – DgoMB: Trawls
Code GulfOfMexicoTrawl
Reported record count 7490
Reported last update 2007–09-24 21:25:51–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

GulfOfAlaska

Item Value
Name North Pacific Groundfish Observer
Code GulfOfAlaska
Reported record count 422150
Reported last update 2007–04-29 21:24:41–1000
Schema summary FedSchema_5
Schema Namespace http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema 203

Lint

The metadata from this DiGIR provider was examined and found to have the following potential issues:

Item Severity Description
Offline FATAL The provider is offline. The last five status codes are (-1, -1, -1, -1, -1).
Old Version WARNING The software version of this provider appears to be out of date.
Output encoding doesn’t seem to be UTF-8 ERROR The encoding of the output stream from the DiGIR provider appears to be None rather than UTF-8. This should be corrected – please check your webserver and provider configuration
Slow average response time (180.0 sec) WARNING The average response time from the last five metadata requests was a bit slower than desireable.
Resource code for InternationalCensusOfMarineMicrobes is a bit long. WARN The code for this resource is quite long. Is that really necessary?
Resource code for SmithsonianEnviromentalResearchCenter is a bit long. WARN The code for this resource is quite long. Is that really necessary?
Resource code for TheSoutheasternRegionalTaxonomicCenter is a bit long. WARN The code for this resource is quite long. Is that really necessary?
Resource code for BermudaAtlanticTZooplanktonCensus is a bit long. WARN The code for this resource is quite long. Is that really necessary?

Metadata Document

A copy of the metadata document from the provider:

<?xml version='1.0' encoding='utf-8'?>
<response xmlns='http://digir.net/schema/protocol/2003/1.0'>
<header>
<version>$Revision: 1.14 $</version>
<sendTime>2007-09-24T21:25:45-1000</sendTime>
<source>http://166.122.60.46:8080/digir/DiGIR.php</source>
<destination>129.237.201.181</destination>
<type>metadata</type>
</header>
<content>
<metadata>
<provider>
<name>OBIS-USA Provider</name>
<accessPoint>http://166.122.60.46:8080/digir/DiGIR.php</accessPoint>
<implementation>$Revision: 1.14 $</implementation>
<host><name>166.122.60.46</name>
<code>OBIS-USA</code>
<relatedInformation>http://pbin.usgs.gov/</relatedInformation>
<contact type='technical'>
<name>Derek Masaki</name>
<title>Systems Administrator and Information Technology Manager for the OBIS-USA.</title>
<emailAddress>dmasaki@usgs.gov</emailAddress>
<phone>&gt;1-808-984-3721</phone>
</contact>
<contact type='administrative'>
<name>Mark Fornwall</name>
<title>Node Manager for the Pacific Basin Information Node</title>
<emailAddress>Mark_Fornwall@usgs.gov</emailAddress>
<phone>1-808-984-3724</phone>
</contact>
<contact type='administrative'>
<name>Derek Masaki</name>
<title>Systems Administrator and Information Technology Manager for the OBIS-USA.</title>
<emailAddress>dmasaki@usgs.gov</emailAddress>
<phone>1-808-984-3721</phone>
</contact>
<contact type='administrative'>
<name>John J. Kineman</name>
<title>Project Principal Investigator</title>
<emailAddress>John.Kineman@colorado.edu</emailAddress>
<phone>303-735-0288</phone>
</contact>
<abstract>USA Regional OBIS Node installation</abstract>
</host><resource>
<name>Bishop Museum Data (OBIS distribution)</name>
<code>BernicePBishopMuseum</code>
<relatedInformation>http://www.bishopmuseum.org/</relatedInformation>
<contact type='technical'>
<name>Richard L. Pyle</name>
<title>Associate Zoologist</title>
<emailAddress>deepreef@bishopmuseum.org</emailAddress>
<phone>18088484115</phone>
</contact>
<contact type='administrative'>
<name>Richard L. Pyle</name>
<title>Associate Zoologist</title>
<emailAddress>deepreef@bishopmuseum.org</emailAddress>
<phone>18088484115</phone>
</contact>
<abstract>Description of the contents of this resource.</abstract>
<keywords>Bishop Museum, Pacific Basin</keywords>
<citation>Bernice P. Bishop Museum</citation>
<useRestrictions>GBIF Data Use Agreement and GBIF Data Sharing Agreement apply</useRestrictions>
<conceptualSchema schemaLocation='http://digir.sourceforge.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd'>http://digir.net/schema/conceptual/darwin/2003/1.0</conceptualSchema>
<conceptualSchema schemaLocation='http://www.iobis.org/obis/obis.xsd'>http://www.iobis.org/obis</conceptualSchema>
<recordIdentifier>CollectionCode</recordIdentifier>
<recordBasis>voucher</recordBasis>
<numberOfRecords>7881</numberOfRecords>
<dateLastUpdated>2007-09-24 21:25:45-1000</dateLastUpdated>
<minQueryTermLength>3</minQueryTermLength>
<maxSearchResponseRecords>10000</maxSearchResponseRecords>
<maxInventoryResponseRecords>10000</maxInventoryResponseRecords>
</resource>
<resource>
<name>Arctic Ocean Diversity</name>
<code>ArcticOceanDiversity</code>
<relatedInformation>http://http://www.sfos.uaf.edu/research/arcdiv/index.html/</relatedInformation>
<contact type='technical'>
<name>Dr. Rob Cermak</name>
<title>Database Manager</title>
<emailAddress>cermak@sfos.uaf.edu</emailAddress>
<phone>1-907-474-7948</phone>
</contact>
<contact type='administrative'>
<name>Dr. Bodil Bluhm</name>
<title>Research Professor</title>
<emailAddress>bluhm@ims.uaf.edu</emailAddress>
<phone>1-907-474-7407</phone>
</contact>
<abstract>Description of the contents of this resource.</abstract>
<keywords>ArcOD CMarZ CA</keywords>
<citation>University of Alaska Fairbanks</citation>
<useRestrictions>GBIF Data Use Agreement and GBIF Data Sharing Agreement apply</useRestrictions>
<conceptualSchema schemaLocation='http://digir.sourceforge.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd'>http://digir.net/schema/conceptual/darwin/2003/1.0</conceptualSchema>
<conceptualSchema schemaLocation='http://www.iobis.org/obis/obis.xsd'>http://www.iobis.org/obis</conceptualSchema>
<recordIdentifier>CollectionCode</recordIdentifier>
<recordBasis>observation</recordBasis>
<numberOfRecords>177</numberOfRecords>
<dateLastUpdated>2007-09-24 21:25:46-1000</dateLastUpdated>
<minQueryTermLength>0</minQueryTermLength>
<maxSearchResponseRecords>6000</maxSearchResponseRecords>
<maxInventoryResponseRecords>10000</maxInventoryResponseRecords>
</resource>
<resource>
<name>Census of Marine Zooplankton</name>
<code>CensusOfMarineZooplankton</code>
<relatedInformation>http://http://www.whoi.edu//</relatedInformation>
<contact type='technical'>
<name>Bob Groman</name>
<title>WHOI manager</title>
<emailAddress>rgroman@whoi.edu</emailAddress>
<phone>1 508-289-2409</phone>
</contact>
<contact type='administrative'>
<name>DR. ANN BUCKLIN</name>
<title>CmarZ coordinator</title>
<emailAddress>Ann.bucklin@uconn.edu</emailAddress>
<phone>1 860-405-9208</phone>
</contact>
<abstract>Description of the contents of this resource.</abstract>
<keywords>Census of Marine Zooplankton</keywords>
<citation>Southern Ocean MOCNESS species N. B. Palmer 2001 and 2002 cruises, Carin Ashjian, PI.</citation>
<useRestrictions>GBIF Data Use Agreement and GBIF Data Sharing Agreement apply</useRestrictions>
<conceptualSchema schemaLocation='http://digir.sourceforge.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd'>http://digir.net/schema/conceptual/darwin/2003/1.0</conceptualSchema>
<conceptualSchema schemaLocation='http://www.iobis.org/obis/obis.xsd'>http://www.iobis.org/obis</conceptualSchema>
<recordIdentifier>CollectionCode</recordIdentifier>
<recordBasis>observation</recordBasis>
<numberOfRecords>1467</numberOfRecords>
<dateLastUpdated>2007-09-24 21:25:46-1000</dateLastUpdated>
<minQueryTermLength>0</minQueryTermLength>
<maxSearchResponseRecords>6000</maxSearchResponseRecords>
<maxInventoryResponseRecords>10000</maxInventoryResponseRecords>
</resource>
<resource>
<name>International Census Of Marine Microbes</name>
<code>InternationalCensusOfMarineMicrobes</code>
<relatedInformation>http://icomm.mbl.edu</relatedInformation>
<contact type='technical'>
<name>Phillip R. Neal</name>
<title>Database Manager</title>
<emailAddress>pneal@mbl.edu</emailAddress>
<phone>1-508-289-7153</phone>
</contact>
<contact type='administrative'>
<name>Dr.David Patterson</name>
<title>Senior Scientist</title>
<emailAddress>dpatterson@mbl.edu</emailAddress>
<phone>1-508-289-7260</phone>
</contact>
<abstract>Description of the contents of this resource.</abstract>
<keywords>Icomm MICROBIS</keywords>
<citation>The Marine Biological Laboratory at Woods Hole</citation>
<useRestrictions>GBIF Data Use Agreement and GBIF Data Sharing Agreement apply</useRestrictions>
<conceptualSchema schemaLocation='http://digir.sourceforge.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd'>http://digir.net/schema/conceptual/darwin/2003/1.0</conceptualSchema>
<conceptualSchema schemaLocation='http://www.iobis.org/obis/obis.xsd'>http://www.iobis.org/obis</conceptualSchema>
<recordIdentifier>CollectionCode</recordIdentifier>
<recordBasis>observation</recordBasis>
<numberOfRecords>2315</numberOfRecords>
<dateLastUpdated>2007-09-24 21:25:46-1000</dateLastUpdated>
<minQueryTermLength>0</minQueryTermLength>
<maxSearchResponseRecords>6000</maxSearchResponseRecords>
<maxInventoryResponseRecords>10000</maxInventoryResponseRecords>
</resource>
<resource>
<name>Smithsonian Environmental Research Center</name>
<code>SmithsonianEnviromentalResearchCenter</code>
<relatedInformation>http://www.serc.si.edu/labs/marine_invasions/biogeography/surveys.jsp</relatedInformation>
<contact type='technical'>
<name>Brian P. Steves</name>
<title>Biological Research Technician</title>
<emailAddress>stevesb@si.edu</emailAddress>
<phone>1-707-875-1970</phone>
</contact>
<contact type='technical'>
<name>Amanda Gilborn</name>
<title>Biological Research Technician</title>
<emailAddress>gilborna@si.edu</emailAddress>
<phone>1-443-482-2380</phone>
</contact>
<abstract>Description of the contents of this resource.</abstract>
<keywords>AIRD, AERC, CBIN, CRC</keywords>
<citation>Marine Invasions Research Lab</citation>
<useRestrictions>GBIF Data Use Agreement and GBIF Data Sharing Agreement apply</useRestrictions>
<conceptualSchema schemaLocation='http://digir.sourceforge.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd'>http://digir.net/schema/conceptual/darwin/2003/1.0</conceptualSchema>
<conceptualSchema schemaLocation='http://www.iobis.org/obis/obis.xsd'>http://www.iobis.org/obis</conceptualSchema>
<recordIdentifier>CollectionCode</recordIdentifier>
<recordBasis>observation</recordBasis>
<numberOfRecords>4808</numberOfRecords>
<dateLastUpdated>2007-09-24 21:25:47-1000</dateLastUpdated>
<minQueryTermLength>0</minQueryTermLength>
<maxSearchResponseRecords>6000</maxSearchResponseRecords>
<maxInventoryResponseRecords>10000</maxInventoryResponseRecords>
</resource>
<resource>
<name>The Southeast Regional Taxonomic Center</name>
<code>TheSoutheasternRegionalTaxonomicCenter</code>
<relatedInformation>http://www.dnr.sc.gov/marine/sertc/</relatedInformation>
<contact type='technical'>
<name>Dr. Rachael King</name>
<title>Assistant Marine Scientist</title>
<emailAddress>kingr@mrd.dnr.state.sc.us</emailAddress>
<phone>1-843-953-9098</phone>
</contact>
<contact type='administrative'>
<name>Dr. Elizabeth L. Wenner</name>
<title>Principal Investigator</title>
<emailAddress>wennere@mrd.dnr.state.sc.us</emailAddress>
<phone>1-843-953-9226</phone>
</contact>
<abstract>Description of the contents of this resource.</abstract>
<keywords>regional invertebrate fauna</keywords>
<citation>Marine Resources Research Institute, South Carolina DNR</citation>
<useRestrictions>GBIF Data Use Agreement and GBIF Data Sharing Agreement apply</useRestrictions>
<conceptualSchema schemaLocation='http://digir.sourceforge.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd'>http://digir.net/schema/conceptual/darwin/2003/1.0</conceptualSchema>
<conceptualSchema schemaLocation='http://www.iobis.org/obis/obis.xsd'>http://www.iobis.org/obis</conceptualSchema>
<recordIdentifier>CollectionCode</recordIdentifier>
<recordBasis>observation</recordBasis>
<numberOfRecords>2095</numberOfRecords>
<dateLastUpdated>2007-09-24 21:25:47-1000</dateLastUpdated>
<minQueryTermLength>0</minQueryTermLength>
<maxSearchResponseRecords>6000</maxSearchResponseRecords>
<maxInventoryResponseRecords>10000</maxInventoryResponseRecords>
</resource>
<resource>
<name>Bermuda Atlantic Time-series Study Zooplankton Census</name>
<code>BermudaAtlanticTZooplanktonCensus</code>
<relatedInformation>http://www.vims.edu/bio/zooplankton/BATS</relatedInformation>
<contact type='technical'>
<name>Joseph Cope</name>
<title>Data Manager</title>
<emailAddress>joecopoe@vims.edu</emailAddress>
<phone>1-804-684-7357</phone>
</contact>
<contact type='administrative'>
<name>Deborah K. Steinberg</name>
<title>Principal Investigator</title>
<emailAddress>debbies@vims.edu</emailAddress>
<phone>1-804-684-7838e</phone>
</contact>
<contact type='administrative'>
<name>Laurence P. Madin</name>
<title>Principal Investigator</title>
<emailAddress>lmadin@whoi.edu</emailAddress>
<phone>1-508-289-2739</phone>
</contact>
<abstract>Abundance and taxonomic analysis of major zooplankton and micronekton groups collected monthly, in both the day and night, from 1994 to 2000 in the Sargasso Sea (31 deg 40 min N, 64 deg 10 min W). The dataset currently contains the following groups of organisms: Branchiopoda, Calanoida, Euphausiacea, Ostracoda, and Thaliacea.</abstract>
<keywords>zooplankton, Bermuda, Atlantic, Sargasso Sea, Branchiopoda, Calanoida, Euphausiacea, Ostracoda, Thaliacea, abundance</keywords>
<citation>Steinberg, D.K. and L.P. Madin (2003) Zooplankton Census. Bermuda Atlantic Time-series Study</citation>
<useRestrictions>GBIF Data Use Agreement and GBIF Data Sharing Agreement apply</useRestrictions>
<conceptualSchema schemaLocation='http://digir.sourceforge.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd'>http://digir.net/schema/conceptual/darwin/2003/1.0</conceptualSchema>
<conceptualSchema schemaLocation='http://www.iobis.org/obis/obis.xsd'>http://www.iobis.org/obis</conceptualSchema>
<recordIdentifier>CollectionCode</recordIdentifier>
<recordBasis>observation</recordBasis>
<numberOfRecords>635</numberOfRecords>
<dateLastUpdated>2007-09-24 21:25:47-1000</dateLastUpdated>
<minQueryTermLength>0</minQueryTermLength>
<maxSearchResponseRecords>6000</maxSearchResponseRecords>
<maxInventoryResponseRecords>10000</maxInventoryResponseRecords>
</resource>
<resource>
<name>ZooGene A DNA Sequence Database for Calanoid Copepods and Euphausiids</name>
<code>ZooplanktonGenomic</code>
<relatedInformation>http://www.zoogene.org</relatedInformation>
<contact type='administrative'>
<name>Ann Bucklin</name>
<title>Principal Investigator</title>
<emailAddress>acb@cisunix.unh.edu</emailAddress>
<phone>603 862-0122</phone>
</contact>
<abstract>An international partnership will create a zooplankton genomic (ZooGene) database of DNA type sequences for calanoid copepods and euphausiids. The ZooGene database will be designed to include all species of these groups and to allow expansion to additional zooplankton groups. The ZooGene partnership includes four P.I.s and thirteen expert taxonomic consultants from seven countries. Zooplankton samples will be sorted from existing archival collections, obtained in coordination with planned oceanographic research efforts, and collected during National Marine Fisheries Service field surveys. The taxonomic experts will confirm species' identifications; DNA sequencing will be done at the University of New Hampshire and, in some cases, in other partners' laboratories. For each species, a DNA type sequence will be determined for a portion of the mitochondrial cytochrome oxidase I (mtCOI) gene; multiple mtCOI sequences will be included as necessary to reflect intraspecific variation. The ZooGene database will be designed, created, managed, maintained, and distributed as part of the proposed work; the data will be integrated into the Ocean Biogeographical Information System (OBIS). Uses for and research applications of the ZooGene database include: 1) uniform standards of species' identification, 2) evaluation of the taxonomic significance of geographic variation within widespread species, 3) identification of cryptic species, 4) accurate estimation of species' diversity, 5) determination of evolutionary relationships among species, and 6) design of rapid molecularly-based species' identification protocols. Education and outreach efforts will include: training of graduate students at UNH and UW; a hands-on Molecular Systematics Workshop at UNH during Summer, 2001; exchanges between the P.I.s, international partners, and their colleagues and students; inclusion of ZooGen molecular and environmental data in the OBIS database, among others; creation and maintenance of a project web site; production of a CD with the ZooGene database and simple search tools; and informal education with the assistance of UNH Sea Grant.</abstract>
<keywords></keywords>
<citation></citation>
<useRestrictions></useRestrictions>
<conceptualSchema schemaLocation='http://digir.sourceforge.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd'>http://digir.net/schema/conceptual/darwin/2003/1.0</conceptualSchema>
<conceptualSchema schemaLocation='http://www.iobis.org/obis/obis.xsd'>http://www.iobis.org/obis</conceptualSchema>
<recordIdentifier>CollectionCode</recordIdentifier>
<recordBasis>observation</recordBasis>
<numberOfRecords>1</numberOfRecords>
<dateLastUpdated>2007-09-24 21:25:48-1000</dateLastUpdated>
<minQueryTermLength>0</minQueryTermLength>
<maxSearchResponseRecords>6000</maxSearchResponseRecords>
<maxInventoryResponseRecords>10000</maxInventoryResponseRecords>
</resource>
<resource>
<name>The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology - DgoMB: Amphipods</name>
<code>GulfOfMexicoAmphipod</code>
<relatedInformation>http://www.dnr.sc.gov/marine/Amphipod/index.html</relatedInformation>
<contact type='technical'>
<name>Dr. Gary Wolff</name>
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<abstract>A research program has been initiated by the Minerals Management Service (Contract No. 1435-01-99-CT-30991) to gain better knowledge of the benthic communities of the deep Gulf of Mexico entitled "The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology". Increasing exploration and exploitation of fossil hydrocarbon resources in the deep-sea prompted the Minerals Management Service of the U.S. Department of the Interior to support an investigation of the structure and function of the assemblages of organisms that live in association with the sea floor in the deep-sea. The program, Deep Gulf of Mexico Benthos or DGoMB, is studying the northern Gulf of Mexico (GOM) continental slope from water depths of 300 meters on the upper continental slope out to greater than 3,000 meters water depth seaward of the base of the Sigsbee and Florida Escarpments. The study is focused on areas that are the most likely targets of future resource exploration and exploitation. However, to develop a Gulf-wide perspective of deep-sea communities, sampling in areas beyond those thought to be potential areas for exploration has been included in the study design. A major enhancement in the program is the extension of the transects onto the abyssal plain of the central Gulf of Mexico through collaborative studies with Mexican scientists. This additional work effort will allow assessment of benthic communities structure and function throughout the basin by sampling the deepest habitats in the region. The program is designed to gain a better ability to predict variations in the structure and function of animal assemblages in relation to water depth, geographic location, time and overlying water mass. Biological studies are integrated with measurements of physical and chemical hydrographic parameters, sediment geochemical properties and geological characteristics that are known to influence benthic community distributions and dynamics. Eight (8) hypotheses are being tested on the basis of measures of benthic community structure. It is hypothesized that community structure varies as a function of: 1) water depth, 2) geographic location (east vs. west), 3) association with canyons, 4) association with mid-slope basins, 5) sea surface primary productivity, 6) proximity to hydrocarbon seeps, 7) time (seasonal and inter-annual scales), and 8) association with the base of escarpments.</abstract>
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<citation>By using data, software, or other information accessed through the OBIS Portal, I agree that, in any publication or presentation of any sort based wholly or in part on material so accessed, I will acknowledge the use of specific records from contributing databases (and its author/s) in the form appearing in the 'Citation' field thereof (if any); and acknowledge the use of the OBIS facility in one of the following prescribed forms:... For OBIS website: Ocean Biogeographic Information System. [date accessed] www.iobis.org For data used: Author, initials. Database title. Retrieved [date accessed] from www.iobis.org Examples: (a) Single level Stocks, K. SeamountsOnline: an online information system for seamount biology. Version 3.1. Retrieved [date] from www.iobis.org. (b) multiple level (for example, to cite a database published on a Compact Disc and accessed through) Picton, B.E., Emblow, C.S., Morrow, C.C., Sides, E.M., Tierney, P., McGrath, D., McGeough, G., McCrea, M., Dinneen, P., Falvey, J., Dempsey, S., Dowse, J. and Costello, M. J. 1999. Marine sites, habitats and species data collected during the BioMar survey of Ireland. In: Picton, B.E. and Costello M. J. (eds), The BioMar biotope viewer: a guide to marine habitats, fauna and flora in Britain and Ireland, Environmental Sciences Unit, Trinity College, Dublin. Retrieved [date] from www.iobis.org.</citation>
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<abstract>A research program has been initiated by the Minerals Management Service (Contract No. 1435-01-99-CT-30991) to gain better knowledge of the benthic communities of the deep Gulf of Mexico entitled "The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology". Increasing exploration and exploitation of fossil hydrocarbon resources in the deep-sea prompted the Minerals Management Service of the U.S. Department of the Interior to support an investigation of the structure and function of the assemblages of organisms that live in association with the sea floor in the deep-sea. The program, Deep Gulf of Mexico Benthos or DGoMB, is studying the northern Gulf of Mexico (GOM) continental slope from water depths of 300 meters on the upper continental slope out to greater than 3,000 meters water depth seaward of the base of the Sigsbee and Florida Escarpments. The study is focused on areas that are the most likely targets of future resource exploration and exploitation. However, to develop a Gulf-wide perspective of deep-sea communities, sampling in areas beyond those thought to be potential areas for exploration has been included in the study design. A major enhancement in the program is the extension of the transects onto the abyssal plain of the central Gulf of Mexico through collaborative studies with Mexican scientists. This additional work effort will allow assessment of benthic communities structure and function throughout the basin by sampling the deepest habitats in the region. The program is designed to gain a better ability to predict variations in the structure and function of animal assemblages in relation to water depth, geographic location, time and overlying water mass. Biological studies are integrated with measurements of physical and chemical hydrographic parameters, sediment geochemical properties and geological characteristics that are known to influence benthic community distributions and dynamics. Eight (8) hypotheses are being tested on the basis of measures of benthic community structure. It is hypothesized that community structure varies as a function of: 1) water depth, 2) geographic location (east vs. west), 3) association with canyons, 4) association with mid-slope basins, 5) sea surface primary productivity, 6) proximity to hydrocarbon seeps, 7) time (seasonal and inter-annual scales), and 8) association with the base of escarpments.</abstract>
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<abstract>A research program has been initiated by the Minerals Management Service (Contract No. 1435-01-99-CT-30991) to gain better knowledge of the benthic communities of the deep Gulf of Mexico entitled "The Deepwater Program: Northern Gulf of Mexico Continental Slope Habitat and Benthic Ecology". Increasing exploration and exploitation of fossil hydrocarbon resources in the deep-sea prompted the Minerals Management Service of the U.S. Department of the Interior to support an investigation of the structure and function of the assemblages of organisms that live in association with the sea floor in the deep-sea. The program, Deep Gulf of Mexico Benthos or DGoMB, is studying the northern Gulf of Mexico (GOM) continental slope from water depths of 300 meters on the upper continental slope out to greater than 3,000 meters water depth seaward of the base of the Sigsbee and Florida Escarpments. The study is focused on areas that are the most likely targets of future resource exploration and exploitation. However, to develop a Gulf-wide perspective of deep-sea communities, sampling in areas beyond those thought to be potential areas for exploration has been included in the study design. A major enhancement in the program is the extension of the transects onto the abyssal plain of the central Gulf of Mexico through collaborative studies with Mexican scientists. This additional work effort will allow assessment of benthic communities structure and function throughout the basin by sampling the deepest habitats in the region. The program is designed to gain a better ability to predict variations in the structure and function of animal assemblages in relation to water depth, geographic location, time and overlying water mass. Biological studies are integrated with measurements of physical and chemical hydrographic parameters, sediment geochemical properties and geological characteristics that are known to influence benthic community distributions and dynamics. Eight (8) hypotheses are being tested on the basis of measures of benthic community structure. It is hypothesized that community structure varies as a function of: 1) water depth, 2) geographic location (east vs. west), 3) association with canyons, 4) association with mid-slope basins, 5) sea surface primary productivity, 6) proximity to hydrocarbon seeps, 7) time (seasonal and inter-annual scales), and 8) association with the base of escarpments.</abstract>
<keywords>Benthic, Hydrocarbon seeps, Marine Invertebrate, Gulf of Mexico, Fish</keywords>
<citation>By using data, software, or other information accessed through the OBIS Portal, I agree that, in any publication or presentation of any sort based wholly or in part on material so accessed, I will acknowledge the use of specific records from contributing databases (and its author/s) in the form appearing in the 'Citation' field thereof (if any); and acknowledge the use of the OBIS facility in one of the following prescribed forms:... For OBIS website: Ocean Biogeographic Information System. [date accessed] www.iobis.org For data used: Author, initials. Database title. Retrieved [date accessed] from www.iobis.org Examples: (a) Single level Stocks, K