Provider ID=105

The content on this page is automatically generated by examining the metadata document and other information obtained from the provider endpoint. This page is generated approximately once per day, so edits to the provider metadata should show up within 24 hours or so.

Detail about DiGIR data provider located at

http://icomm.mbl.edu/digir/DiGIR.php

ID

Internal identifier for provider

Name

The provider name

Code

The provider code as reported in the metadata

Related Information

URL for additional information about the service

Version

The software version code

Implementation

Provider implementation code

Namespace

The namespace of the metadata document

Service Name

Access point

The provider access point as reported in the metadata.

Last Five Status

Status codes of provider when last checked the last five times.

Response Times

Last five metadata response times in seconds. Note that response times at 180 seconds or over indicate a network socket timeout.

Encoding

The character encoding detected by the Big Dig. This is accurate in most cases, but sometimes gets a bit confused. In anycase, the output should be UTF-8 encoding.

Item	Value
ID	105
Name	Marine Biology Laboratory
Code	ICoMM
Related Information	http://icomm.mbl.edu
Version	$Revision: 1.21 $
Implementation	$Revision: 1.21 $
Name space	http://digir.net/schema/protocol/2003/1.0
Service name	International Census of Marine Microbes – ICoMM
Access Point	http://icomm.mbl.edu:80/digir/DiGIR.php
Last Five Status	(200, 200, 200, 200, 200)
Last Five Response (sec)	(0.4, 0.4, 0.3, 0.4, 3.4)
Encoding Detected	us-ascii

Registry Info

This provider was found to be registered in the following registries.

ID

Internal identifier for registry

Name

The name of the registry

More Info

URL for additional information about the registry

Last Checked

When the registry was last examined

ID	Name	More Info	Last Checked
5	GBIF	http://www.gbif.org/	2008–02-17 08:13:34+0000
6	GBIF_MANIS	http://www.gbif.org/	2008–02-17 08:15:33+0000
7	OBIS	http://www.gbif.org/	2008–02-17 08:15:34+0000

Resources

The following resources were found to be hosted by this data provider.

microbis

Item	Value
Name	MICROBIS database
Code	microbis
Reported record count	2881
Reported last update	2008–02-19T02:28:43–05:00
Schema summary	FedSchema_5
Schema Namespace	http://digir.net/schema/conceptual/darwin/2003/1.0
Num resources using schema	203

Lint

The metadata from this DiGIR provider was examined and found to have the following potential issues:

Item	Severity	Description
Old Version	WARNING	The software version of this provider appears to be out of date.
Output encoding doesn’t seem to be UTF-8	ERROR	The encoding of the output stream from the DiGIR provider appears to be us-ascii rather than UTF-8. This should be corrected – please check your webserver and provider configuration

Metadata Document

A copy of the metadata document from the provider:

<?xml version='1.0' encoding='utf-8'?>
<response xmlns='http://digir.net/schema/protocol/2003/1.0'>
<header>
<version>$Revision: 1.21 $</version>
<sendTime>2008-02-19T02:28:43-05:00</sendTime>
<source>http://icomm.mbl.edu:80/digir/DiGIR.php</source>
<destination>129.237.201.181</destination>
<type>metadata</type>
</header>
<content>
<metadata>
<provider>
<name>International Census of Marine Microbes - ICoMM</name>
<accessPoint>http://icomm.mbl.edu:80/digir/DiGIR.php</accessPoint>
<implementation>$Revision: 1.21 $</implementation>
<host><name>Marine Biology Laboratory</name>
<code>ICoMM</code>
<relatedInformation>http://icomm.mbl.edu</relatedInformation>
<contact type='administrative'>
<name>Phillip Neal</name>
<title>Bioinformatics Analyst</title>
<emailAddress>pneal(at)mbl(dot)edu</emailAddress>
<phone>001 508 289 7153</phone>
</contact>
<contact type='technical'>
<name>Phillip Neal</name>
<title>Bioinformatics Analyst</title>
<emailAddress>pneal(at)mbl(dot)edu</emailAddress>
<phone>001 508 289 7153</phone>
</contact>
<abstract>The International Census of Marine Microbes (ICoMM) will facilitate the inventory of marine microbial diversity. It will develop a strategy to (1) catalogue all known diversity of single-cell organisms inclusive of the Bacteria, Archaea, Protista and associated viruses, (2) explore and discover unknown microbial diversity, and (3) place that knowledge into appropriate ecological and evolutionary contexts.</abstract>
</host><resource>
<name>MICROBIS database</name>
<code>microbis</code>
<relatedInformation>http://icomm.mbl.edu</relatedInformation>
<contact type='technical'>
<name>Phillip Neal</name>
<title>Bioinformatics Analyst</title>
<emailAddress>pneal(at)mbl(dot)edu</emailAddress>
<phone>001-508-289-7153</phone>
</contact>
<contact type='administrative'>
<name>Phillip Neal</name>
<title>Bioinformatics Analyst</title>
<emailAddress>pneal(at)mbl(dot)edu</emailAddress>
<phone>001-508-289-7153</phone>
</contact>
<abstract>MICROBIS is a database of marine microbial biota , most gained from genomic analysis used in support of ICOMM.</abstract>
<keywords>Protista,Algae,Bacteria,eukaryote,prokaryote,marine,ocean,biodiversity,454,genomics,16s,DNA,tag sequencing</keywords>
<citation>ICoMM MICROBIS</citation>
<useRestrictions></useRestrictions>
<conceptualSchema schemaLocation='http://digir.sourceforge.net/schema/conceptual/darwin/2003/1.0/darwin2.xsd'>http://digir.net/schema/conceptual/darwin/2003/1.0</conceptualSchema>
<conceptualSchema schemaLocation='http://www.iobis.org/obis/obis.xsd'>http://www.iobis.org/obis</conceptualSchema>
<recordIdentifier>Unique identifier for this resource (within the institution)</recordIdentifier>
<recordBasis>voucher - can be voucher or observation - applies to *all* records in resource</recordBasis>
<numberOfRecords>2881</numberOfRecords>
<dateLastUpdated>2008-02-19T02:28:43-05:00</dateLastUpdated>
<minQueryTermLength>3</minQueryTermLength>
<maxSearchResponseRecords>10000</maxSearchResponseRecords>
<maxInventoryResponseRecords>10000</maxInventoryResponseRecords>
</resource>
</provider>
</metadata>
</content>
<diagnostics>
<diagnostic code="STATUS_INTERVAL" severity="info">3600</diagnostic>
<diagnostic code="STATUS_DATA" severity="info">2,0,0</diagnostic>
</diagnostics></response>